Data from: Tips and nodes are complimentary not competing approaches to the calibration of molecular clocks

Dataset

Description

Molecular clock methodology provides the best means of establishing evolutionary timescales, the accuracy and precision of which remain reliant on calibration, traditionally based on fossil constraints on clade (node) ages. Tip calibration has been developed to obviate undesirable aspects of node calibration, including the need for maximum age constraints that are invariably very difficult to justify. Instead, tip calibration incorporates fossil species as dated tips alongside living relatives, potentially improving the accuracy and precision of divergence time estimates. We demonstrate that tip calibration yields node calibrations that violate fossil evidence, contributing to unjustifiably young and ancient age estimates, less precise and (presumably) accurate than conventional node calibration. However, we go on to show that node and tip calibrations are complementary, producing meaningful age estimates, with node minima enforcing realistic ages and fossil tips interacting with node calibrations to objectively define maximum age constraints on clade ages. Together, tip and node calibrations may yield evolutionary timescales that are better justified, more precise and accurate than either calibration strategy can achieve alone.,MrBayes_AnalysesNEXUS input file for analyses in MrBayes. Three approaches to calibration are included: Tip Calibration; Node Calibration; Tip and Node Combined Calibration.TED_Post_FullMajority-rule consensus tree obtained from a sample from the posterior distribution in the total-evidence, tip-calibrated, divergence time analysis.The position of all fossil taxa are presented in this topology.TipandNode_Post_FullMajority-rule consensus tree obtained from a posterior sample of trees in the combined tip and node calibration analysis. The position of all fossil taxa are presented in this topology.Supplementary_MethodsJustification for sampling the time-prior from a fixed consensus-tree topology and details of all divergence-time analyses performed.,
Date made available10 Mar 2016
PublisherDryad

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