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Parameter estimation and species tree rooting using ALE and GeneRax

  • Tom A. Williams (Creator)

Dataset

Description

Some output files associated with the analyses in an article (currently) entitled "Parameter estimation and species tree rooting using ALE and GeneRax" The outputs were obtained by running ALEml_undated either with default (maximum likelihood) estimation of the delta, tau, and lambda parameters, or with delta:tau fixed to a pre-defined ratio. The option to fix delta:tau (or other parameter combinations) was recently added to ALE (https://github.com/ssolo/ALE). The .ale files used as input for these analyses (for the bacterial dataset) are available from the data repository for the original 2021 paper here: https://doi.org/10.6084/m9.figshare.12651074.v12
Date made available2023
PublisherZenodo

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  • 1 Article (Academic Journal)

  • Parameter Estimation and Species Tree Rooting Using ALE and GeneRax

    Williams, T., Davín, A. A., Morel, B., Szantho, L., Spang, A., Stamatakis, A., Hugenholtz, P. & Szöllősi, G. J., 18 Jul 2023, In: Genome Biology and Evolution. 15, 7, evad134.

    Research output: Contribution to journal › Article (Academic Journal) › peer-review

    Open Access
    5 Citations (Scopus)

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