1992 …2020

Research output per year

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Research Output

2020

Computer-aided whole-cell design: taking a holistic approach by integrating synthetic with systems biology

Marucci, L., Barberis, M., Karr, J., Ray, O., Race, P. R., de Souza Andrade, M., Grierson, C. S., Hoffmann, S. A., Landon, S., Rech, E., Rees-Garbutt, J. P., Seabrook, R., Shaw, W. & Woods, C. J., 7 Aug 2020, In : Frontiers in Bioengineering and Biotechnology. 8, 11 p., 942.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
9 Downloads (Pure)

Designing Minimal Genomes Using Whole-Cell Models

Rees-Garbutt, J., Chalkley, O., Landon, S., Purcell, O., Marucci, L. & Grierson, C., 11 Feb 2020, In : Nature Communications. 11, 12 p., 836 (2020).

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
56 Downloads (Pure)

In vivo Feedback Control of an Antithetic Molecular-Titration Motif in Escherichia coli using Microfluidics

Shannon, B. M., Zamora Chimal, C. G., Postiglione, L., Salzano, D., Grierson, C. S., Marucci, L., Savery, N. J. & Di Bernardo, M., 20 Feb 2020, (Submitted) In : ACS Synthetic Biology.

Research output: Contribution to journalArticle (Academic Journal)

Micro-scale interactions between root hairs and soil particles control soil erosion

Baets, S. D., Denbigh, T. D. G., Smyth, K. M., Eldridge, B. M., Weldon, L., Higgins, B., Matyjaszkiewicz, A., Meersmans, J., Larson, E. R., Chenchiah, I. V., Liverpool, T. B., Quine, T. A. & Grierson, C. S., 12 Mar 2020, (Accepted/In press) In : Communications Biology. 3, 11 p., 164 (2020).

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
25 Downloads (Pure)

Testing theoretical minimal genomes using whole-cell models

Rees-Garbutt, J. P., Rightmyer, J., Chalkley, O., Marucci, L. & Grierson, C. S., 10 Sep 2020, (Submitted) In : Genome Biology.

Research output: Contribution to journalArticle (Academic Journal)

2019

Developing a graduate training program in Synthetic Biology: SynBioCDT

Cazimoglu, I., Darlington, A. P. S., Grigonyte, A., Hoskin, C. E. G., Liu, J., Oppenheimer, R., Siller-Farfán, J. A., Grierson, C. & Papachristodoulou, A., 21 May 2019, In : Synthetic Biology. 4, 1, 8 p., ysz006.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
1 Citation (Scopus)
108 Downloads (Pure)

Genome-driven cell engineering review: In vivo and in silico metabolic and genome engineering

Landon, S., Rees, J., Marucci, L. & Grierson, C., 3 Jul 2019, In : Essays in Biochemistry. 63, 2, p. 267-284 18 p.

Research output: Contribution to journalReview article (Academic Journal)

Open Access
File
2 Citations (Scopus)
146 Downloads (Pure)
2018

Designing Genomes using Design-Simulate-Test Cycles

Rees, J., Chalkley, O., Purcell, O., Marucci, L. & Grierson, C., 12 Jun 2018, (Submitted) In : bioRxiv. 16 p.

Research output: Contribution to journalArticle (Academic Journal)

File
197 Downloads (Pure)

Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks

Gorochowski, T. E., Grierson, C. S. & Di Bernardo, M., 28 Mar 2018, In : Science Advances. 4, 3, 14 p., eaap9751.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
8 Citations (Scopus)
141 Downloads (Pure)

The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth

Schoenaers, S., Balcerowicz, D., Breen, G., Hill, K., Zdanio, M., Mouille, G., Holman, T. J., Oh, J., Wilson, M. H., Nikonorova, N., Vu, L. D., De Smet, I., Swarup, R., De Vos, W. H., Pintelon, I., Adriaensen, D., Grierson, C., Bennett, M. J. & Vissenberg, K., 5 Mar 2018, In : Current Biology. 28, 5, p. 722-732.e6 11 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
31 Citations (Scopus)
269 Downloads (Pure)
2017

An Orthogonal Multi-input Integration System to Control Gene Expression in Escherichia coli

Annunziata, F., Matyjaszkiewicz, A., Fiore, G., Grierson, C., Di Bernardo, M., Marucci, L. & Savery, N., 20 Oct 2017, In : ACS Synthetic Biology. 6, 10, p. 1816-1824 9 p.

Research output: Contribution to journalLetter (Academic Journal)

Open Access
File
13 Citations (Scopus)
467 Downloads (Pure)

BSim 2.0: An Advanced Agent-Based Cell Simulator

Matyjaszkiewicz, A. W., Fiore, G., Annunziata, F., Grierson, C. S., Savery, N. J., Marucci, L. & di Bernardo, M., 20 Oct 2017, In : ACS Synthetic Biology. 6, 10, p. 1969-1972 4 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
9 Citations (Scopus)
271 Downloads (Pure)

Design of a multicellular feedback control strategy in a synthetic bacterial consortium

Fiore, G., Matyjaszkiewicz, A., Annunziata, F., Grierson, C., Savery, N. J., Marucci, L. & Di Bernardo, M., Apr 2017, 2016 IEEE 55th Conference on Decision and Control (CDC 2016): Proceedings of a meeting held 12-14 December 2016, Las Vegas, Nevada, USA. Institute of Electrical and Electronics Engineers (IEEE), p. 3338-3343 6 p. 7798771

Research output: Chapter in Book/Report/Conference proceedingConference Contribution (Conference Proceeding)

Open Access
File
3 Citations (Scopus)
252 Downloads (Pure)

In-Silico Analysis and Implementation of a Multicellular Feedback Control Strategy in a Synthetic Bacterial Consortium

Fiore, G., Matyjaszkiewicz, A., Annunziata, F., Grierson, C., Savery, N., Marucci, L. & Di Bernardo, M., 17 Mar 2017, In : ACS Synthetic Biology. 6, 3, p. 507–517 11 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
16 Citations (Scopus)
301 Downloads (Pure)
2014

Mathematical Modeling of Plant Root Hair Initiation: Dynamics of Localized Patches

Brena Medina, V. F., Champneys, A. R., Grierson, C. & Ward, M. J., 2014, In : SIAM Journal on Applied Dynamical Systems. 13, 1, p. 210-248 39 p.

Research output: Contribution to journalArticle (Academic Journal)

12 Citations (Scopus)
2013

A proteomic approach identifies many novel palmitoylated proteins in Arabidopsis

Hemsley, P. A., Weimar, T., Lilley, K. S., Dupree, P. & Grierson, C. S., Feb 2013, In : New Phytologist. 197, 3, p. 805-814 10 p.

Research output: Contribution to journalArticle (Academic Journal)

81 Citations (Scopus)

Palmitoylation in plants: New insights through proteomics

Hemsley, P. A., Weimar, T., Lilley, K., Dupree, P. & Grierson, C., 1 Aug 2013, In : Plant Signaling and Behavior. 8, 8

Research output: Contribution to journalArticle (Academic Journal)

9 Citations (Scopus)
2012

BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology

Gorochowski, T. E., Matyjaszkiewicz, A. W., Todd, T., Oak, N. P., Kowalska, K., Reid, S., Tsaneva-Atanasova, K. T., Savery, N. J., Grierson, C. S. & di Bernardo, M., 24 Aug 2012, In : PLoS ONE. 7, 8, 9 p., e42790.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
53 Citations (Scopus)
310 Downloads (Pure)

Evolving dynamical networks: A formalism for describing complex systems

Gorochowski, T. E., Di Bernardo, M. & Grierson, C. S., 2012, In : Complexity. 17, 3, p. 18-25 8 p.

Research output: Contribution to journalArticle (Academic Journal)

30 Citations (Scopus)

Temperature dependence of ssrA-tag mediated protein degradation

Purcell, O., Grierson, C. S., di Bernardo, M. & Savery, N. J., 2012, In : Journal of Biological Engineering. 6, 1, p. 10

Research output: Contribution to journalArticle (Academic Journal)

13 Citations (Scopus)

Using Aging to Visually Uncover Evolutionary Processes on Networks

Gorochowski, T. E., di Bernardo, M. & Grierson, C. S., Aug 2012, In : IEEE Transactions on Visualization and Computer Graphics. 18, 8, p. 1343-1352 10 p.

Research output: Contribution to journalArticle (Academic Journal)

19 Citations (Scopus)
2011

A multi-functional synthetic gene network: A frequency multiplier, oscillator and switch

Purcell, O., di Bernardo, M., Grierson, CS. & Savery, NJ., Feb 2011, In : PLoS ONE. 6 (2), p. e16140 - e16140 12 p.

Research output: Contribution to journalArticle (Academic Journal)

22 Citations (Scopus)

One hundred important questions facing plant science research

Grierson, CS., Barnes, SR., Chase, MW., Clarke, M., Edwards, KJ., Grierson, D., Jellis, GJ., Jones, JD., Knapp, S., Oldroyd, G., Poppy, G., Temple, P., Williams, R. & Bastow, R., Sep 2011, In : New Phytologist. 192, p. 6 - 12 6 p.

Research output: Contribution to journalArticle (Academic Journal)

55 Citations (Scopus)

The Ankyrin Repeats and DHHC S-acyl Transferase Domain of AKR1 Act Independently to Regulate Switching from Vegetative to Mating States in Yeast

Hemsley, P. A. & Grierson, C. S., Dec 2011, In : PLoS ONE. 6, 12, p. 1 - 10 10 p., e28799.

Research output: Contribution to journalArticle (Academic Journal)

20 Citations (Scopus)
2010

A comparative analysis of synthetic genetic oscillators

Purcell, O., Savery, NJ., Grierson, CS. & Di Bernardo, M., Nov 2010, In : Journal of the Royal Society Interface. 7, p. 1503 - 1524 21 p.

Research output: Contribution to journalArticle (Academic Journal)

125 Citations (Scopus)

Cell biology

Luschnig, C. & Grierson, CS., 2010, In : Current Opinion in Plant Biology. 13

Research output: Contribution to journalArticle (Academic Journal)

Evolving enhanced topologies for the synchronization of dynamical complex networks

Gorochowski, T. E., di Bernardo, M. & Grierson, C. S., 21 May 2010, In : Physical Review E: Statistical, Nonlinear, and Soft Matter Physics. 81, 5, p. - 13 p., 056212.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
45 Citations (Scopus)
223 Downloads (Pure)

Modelling dynamic plant cells

Liu, J., Grierson, CS., Webb, AAR. & Hussey, PJ., Dec 2010, In : Current Opinion in Plant Biology. 13, p. 744 - 749 6 p.

Research output: Contribution to journalArticle (Academic Journal)

13 Citations (Scopus)

Pollen-tube tip growth requires a balance of lateral propagation and global inhibition of Rho-family GTPase activity

Hwang, J. U., Wu, G., Yan, A., Lee, Y. J., Grierson, C. S. & Yang, Z., Feb 2010, In : Journal of Cell Science. 123, 3, p. 340 - 350 11 p.

Research output: Contribution to journalArticle (Academic Journal)

53 Citations (Scopus)

The dynamic plant cell

Luschnig, C. & Grierson, CS., Dec 2010, In : Current Opinion in Plant Biology. 13, p. 621 - 622 2 p.

Research output: Contribution to journalArticle (Academic Journal)

2009

A theoretical model for ROP localisation by auxin in Arabidopsis root hair cells

Payne, R. J. H. & Grierson, C. S., Dec 2009, In : PLoS ONE. 4, 12, p. 1-8 8 p.

Research output: Contribution to journalArticle (Academic Journal)

31 Citations (Scopus)

Auxin transport through non-hair cells sustains root-hair development

Jones, A. R., Kramer, E. M., Knox, K., Swarup, R. J., Bennett, M. J., Lazarus, C. M., Leyser, H. M. O. & Grierson, C. S., Jan 2009, In : Nature Cell Biology. 11, 1, p. 78 - 84 7 p.

Research output: Contribution to journalArticle (Academic Journal)

151 Citations (Scopus)

Genetics of Root Hair Development

Grierson, CS. & Schiefelbein, J., 2009, Root Hairs. Emons, A. M. C. & Ketelaar, T. (eds.). Springer, Vol. Plant Cell Monographs Volume 12. p. 1 - 26 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter in a book

NetEvo: a computational framework for the evolution of dynamical complex networks

Gorochowski, TE., di Bernardo, M. & Grierson, CS., 17 Dec 2009, (Unpublished).

Research output: Working paperWorking paper and Preprints

File
69 Downloads (Pure)

phytochrome B and PIF4 Regulate Stomatal Development in Response to Light Quantity

Casson, S. A., Franklin, K. A., Gray, J. E., Grierson, C. S., Whitelam, G. C. & Hetherington, A. M., 10 Feb 2009, In : Current Biology. 19, 3, p. 229-234 6 p.

Research output: Contribution to journalArticle (Academic Journal)

123 Citations (Scopus)
2008

Assaying protein palmitoylation in plants

Hemsley, PA., Taylor, LA. & Grierson, CS., Jan 2008, In : Plant Methods. 4:2, p. 1 - 7 7 p.

Research output: Contribution to journalArticle (Academic Journal)

39 Citations (Scopus)

Multiple roles for protein palmitoylation in plants

Hemsley, PA. & Grierson, CS., Jun 2008, In : Trends in Plant Science. 13:6, p. 295 - 302 8 p.

Research output: Contribution to journalArticle (Academic Journal)

53 Citations (Scopus)

Practical Systems Biology

Hetherington, AM. & Grierson, CS., 2008, Taylor & Francis Group. 300 p.

Research output: Book/ReportAuthored book

2007

Phytochrome coordinates Arabidopsis shoot and root development

Salisbury, FJ., Hall, A., Grierson, CS. & Halliday, KJ., May 2007, In : Plant Journal. 50, p. 429 - 438 9 p.

Research output: Contribution to journalArticle (Academic Journal)

109 Citations (Scopus)
2005

The TIP GROWTH DEFECTIVE1 S-Acyl transferase regulates plant cell growth in Arabidopsis

Hemsley, PA., Kemp, AC. & Grierson, CS., Sep 2005, In : The Plant Cell. 17 (9), p. 2554 - 2563 9 p.

Research output: Contribution to journalArticle (Academic Journal)

88 Citations (Scopus)
2004

A putative palmitoyl transferase in Arabidopsis is encoded by TIP1

Hemsley, PA., Kemp, AC. & Grierson, CS., 2004, Society for Experimental Biology Annual Conference, Edinburgh.

Research output: Chapter in Book/Report/Conference proceedingConference Contribution (Conference Proceeding)

OXI1 kinase is necessary for oxidative burst-mediated signalling in Arabidopsis

Rentel, MC., Lecourieux, D., Ouaked, F., Usher, SL., Petersen, L., Okamoto, H., Knight, H., Peck, SC., Grierson, CS., Hirt, H. & Knight, MR., 26 Feb 2004, In : Nature. 427 (6977), p. 858 - 861 4 p.

Research output: Contribution to journalArticle (Academic Journal)

385 Citations (Scopus)

The Arabidopsis COW1 gene encodes a phosphatidylinositol transfer protein essential for root hair tip growth

Böhme, K., Li, Y., Charlot, F., Grierson, CS., Marrocco, K., Okada, K., Laloue, M. & Nogué, F., 2004, In : Plant Journal. 40:5, p. 686 - 698

Research output: Contribution to journalArticle (Academic Journal)

66 Citations (Scopus)

The role of the cytoskeleton in root hair development

Ketelaar, T. & Grierson, CS., 2004, The Plant Cytoskeleton in Cell Differentiation and Development. Hussey, P. (ed.). Blackwell Publishers

Research output: Chapter in Book/Report/Conference proceedingChapter in a book

2003

A simple method for obtaining cell-specific cDNA from small numbers of growing root-hair cells in Arabidopsis thaliana

Jones, MA. & Grierson, CS., 2003, In : Journal of Experimental Botany. 54, p. 1373 - 1378

Research output: Contribution to journalArticle (Academic Journal)

12 Citations (Scopus)

AXR3 and SHY2 interact to regulate root hair development

Knox, K., Grierson, CS. & Leyser, O., Dec 2003, In : Development (Cambridge). 130 (23), p. 5769 - 5777 9 p.

Research output: Contribution to journalArticle (Academic Journal)

112 Citations (Scopus)

The Arabidopsis 14-3-3 protein, GF14w, binds to the Cdc25 phosphatase of Schizosaccharomyces pombe and AtGF14w complements the S. pombe DNA replication checkpoint

Sorrell, DA., Marchbank, AM., Chrimes, DA., Dickinson, JR., Rogers, HJ., Francis, D., Grierson, CS. & Halford, NG., 2003, In : PLANTA. 218(1), p. 50 - 57

Research output: Contribution to journalArticle (Academic Journal)

2002

Positioning of Nuclei in Arabidopsis Root Hairs: An Actin-Regulated Process of Tip Growth

Ketelaar, T., Faivre-Moskalenko, C., Esseling, JJ., de Ruijter, NCA., Grierson, CS., Dogterom, M. & Emons, AMC., 2002, In : The Plant Cell. 14, p. 2941 - 2955 11.

Research output: Contribution to journalArticle (Academic Journal)

141 Citations (Scopus)

Root Hairs

Grierson, CS. & Schiefelbein, J., 2002, The Arabidopsis Book. C. R. S. & E. M. M. (eds.). American Society of Plant Biologists, Rockville, MD

Research output: Chapter in Book/Report/Conference proceedingChapter in a book