Dr I C G Campbell

Search results

• 2023

  Mobilisation of jerboa kidney gene networks during dehydration and opportunistic rehydration

  Gillard, B. T., Amor, N., Iraizoz, F. A., Pauža, A. G., Campbell, C., Greenwood, M. P., Alagaili, A. N. & Murphy, D., 9 Aug 2023, In: iScience. 26, 9, 107574.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  • Gene Network 100%
  • Transcriptome 100%
  • Ribosomal Protein 50%
  • Aquaporin 50%
  • Transcriptomics 50%
• 2020

  A Novel Stratification Framework for Predicting Outcome in Patients with Prostate Cancer

  Campbell, I. C. G., Luca, B., Moulton, V., Ellis, C., Edwards, D. R., Cooper, R., Clark, J., Brewer, D. & Campbell, C., 20 Mar 2020, In: British Journal of Cancer.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  • Prostate Cancer 100%
  • Cluster Analysis 100%
  • Genomics 100%
  • Malignant Neoplasm 40%
  • Biochemical Recurrence 40%
  7 Citations (Scopus)

• CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome

  Rogers, M. F., Gaunt, T. R. & Campbell, C., 13 Apr 2020, In: Bioinformatics. btaa242.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Point Mutation 100%
  • Coding Region 80%
  • Germline 60%
  • Germ Cell 60%
  • Human Genome 20%
  21 Citations (Scopus)

  121 Downloads (Pure)
• 2019

  Estimating the Frequency of Single Point Driver Mutations across Common Solid Tumours

  Darbyshire, M., du Toit, Z., Rogers, M. F., Gaunt, T. R. & Campbell, C., 17 Sept 2019, In: Scientific Reports. 9, 11 p., 13452 (2019).

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Single-Nucleotide Polymorphism 100%
  • Coding Region 50%
  8 Citations (Scopus)

  242 Downloads (Pure)

• Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel

  Alim, F. Z. D., Romanova, E. V., Tay, Y. L., Rahman, A. Y. B. A., Chan, K. G., Hong, K. W., Rogers, M., Southey, B. R., Greenwood, M. P., Mecawi, A. S., Mustafa, M. R., Mahy, N., Campbell, C., Antunes-Rodrigues, J., Sweedler, J. V., Murphy, D. & Hindmarch, C. C. T., 18 Jun 2019, In: PLoS ONE. 14, 6, 33 p., e0216679.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Dromedary 100%
  • Vasopressin 100%
  • Neuropeptide 75%
  • Arginine Vasopressin 42%
  • Camel 25%
  13 Citations (Scopus)

  294 Downloads (Pure)
• 2018

  FATHMM-XF: accurate prediction of pathogenic point mutations via extended features

  Rogers, M., Shihab, H. A., Mort, M., Cooper, D. N., Gaunt, T. & Campbell, C., 1 Feb 2018, In: Bioinformatics. 34, 3, p. 511-513 3 p., btx536.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Point Mutation 100%
  • Human Genome 50%
  • Coding Region 50%
  279 Citations (Scopus)

  609 Downloads (Pure)
• 2017

  An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome

  Ferlaino, M., Rogers, M. F., Shihab, H. A., Mort, M., Cooper, D. N., Gaunt, T. R. & Campbell, C., 6 Oct 2017, In: BMC Bioinformatics. 18, 1, 442.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Indel 100%
  • Human Genome 100%
  • Coding Region 100%
  • Single-Nucleotide Polymorphism 10%
  • Exome 10%
  31 Citations (Scopus)

  371 Downloads (Pure)

• CScape: a tool for predicting oncogenic single-point mutations in the cancer genome

  Rogers, M., Shihab, H., Gaunt, T. & Campbell, C., 14 Sept 2017, In: Scientific Reports. 7, 1, 11 p., 11597.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Point Mutation 100%
  • Coding Region 100%
  • Somatic Mutation 25%
  • Genomics 25%
  64 Citations (Scopus)

  509 Downloads (Pure)

• GTB – An Online Genome Tolerance Browser

  Shihab, H., Rogers, M., Ferlaino, M., Campbell, C. & Gaunt, T., 6 Jan 2017, In: BMC Bioinformatics. 18, 20, 6 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Single-Nucleotide Polymorphism 100%
  • Human Genome 50%
  4 Citations (Scopus)

  408 Downloads (Pure)

• HIPred: an integrative approach to predicting haploinsufficient genes

  Shihab, H., Rogers, M., Campbell, C. & Gaunt, T., 15 Jun 2017, In: Bioinformatics. 33, 12, p. 1751-1757 7 p., btx028.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Haploinsufficiency 100%
  • Exome 25%
  • Exome Sequencing 25%
  • Genome Sequencing 25%
  • Epigenetics 25%
  31 Citations (Scopus)

  4808 Downloads (Pure)

• Unsupervised network analysis of the plastic supraoptic nucleus transcriptome predicts caprin2 regulatory interactions

  Loh, S. Y., Jahans-Price, T., Greenwood, M. P., Greenwood, M., Hoe, S. Z., Konopacka, A., Campbell, C., Murphy, D. & Hindmarch, C. C. T., Nov 2017, In: eNeuro. 4, 6, 13 p., e0243-17.2017.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • RNA-binding Protein 100%
  • Transcriptome 100%
  • Supraoptic Nucleus 100%
  • Secretion (Process) 50%
  • Peptide Hormone 50%
  4 Citations (Scopus)

  328 Downloads (Pure)
• 2016

  A protein domain and family based approach to rare variant association analysis

  Richardson, T., Shihab, H., Rivas, M. A., McCarthy, M. I., Campbell, C., Timpson, N. & Gaunt, T., 29 Apr 2016, In: PLoS ONE. 11, 4, 12 p., e0153803.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Protein Family 100%
  • Protein Tertiary Structure 100%
  • Lipid 25%
  • Minor Allele Frequency 12%
  • Protein-Protein Interaction 12%
  5 Citations (Scopus)

  329 Downloads (Pure)

• Collapsed Methylation Quantitative Trait Loci analysis for Low Frequency and Rare variants

  Richardson, T., Shihab, H., Hemani, G., Zheng, J., Hannon, E., Mill, J., Carnero-Montoro, E., Bell, J. T., Lyttleton, O., McArdle, W., Ring, S., Rodriguez, S., Campbell, C., Davey Smith, G., Relton, C., Timpson, N. & Gaunt, T., 1 Oct 2016, In: Human Molecular Genetics. 25, 19, p. 4339-4349 11 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Methylation 100%
  • Quantitative Trait Locus 100%
  • DNA Methylation 50%
  • Genetic Divergence 25%
  • CpG Island 25%
  10 Citations (Scopus)

  583 Downloads (Pure)

• Incorporating non-coding annotations into rare variant analysis

  Richardson, T., Campbell, C., Timpson, N. & Gaunt, T., 29 Apr 2016, In: PLoS ONE. 11, 4, 15 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Coding Region 100%
  • Lipid 50%
  • Candidate Gene 50%
  • Genome Wide Association Study 50%
  • Gene Analysis 50%
  8 Citations (Scopus)

  321 Downloads (Pure)

• Texture analysis in gel electrophoresis images using an integrative kernel-based approach

  Fernandez-Lozano, C., Seoane, J. A. A., Gestal, M., Gaunt, T. R., Dorado, J., Pazos, A. & Campbell, I. C. G., 13 Jan 2016, In: Scientific Reports. 6, 13 p., 19256.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Gel Electrophoresis 100%
  • Two Dimensional Polyacrylamide Gel Electrophoresis 100%
  • Two-Dimensional Gel Electrophoresis 100%
  • Proteomics 33%
  17 Citations (Scopus)

  379 Downloads (Pure)
• 2015

  An Integrative Approach to Predicting the Functional Effects of Non-Coding and Coding Sequence Variation

  Shihab, H. A., Rogers, M. F., Gough, J. J. T., Mort, M., Cooper, D. N., Day, I. N. M., Gaunt, T. R. & Campbell, I. C. G., 15 May 2015, In: Bioinformatics. 31, 10, p. 1536–1543

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  474 Citations (Scopus)

• iCLIP identifies novel roles for SAFB1 in regulating RNA processing and neuronal function

  Rivers, C. A., Idris, J., Scott, H. L., Rogers, M. F., Lee, Y.-B., Gaunt, J. R., Phylactou, L., Curk, T., Campbell, I. C. G., Ule, J., Norman, M. R. & Uney, J. B., 22 Dec 2015, In: BMC Biology. 13, 1, 15 p., 111.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Exon 100%
  • RNA Processing 100%
  • Isoform 60%
  • Cross-Link 20%
  • Reverse Transcription Polymerase Chain Reaction 20%
  19 Citations (Scopus)

  432 Downloads (Pure)
• 2011

  Generalized sparse metric learning with relative comparisons

  Campbell, I., Jun 2011, In: Knowledge and Information Systems. 28, p. 25 - 45 20 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Machine Learning 100%
  • Learning System 100%
  • Learning Framework 50%
  • Knowledge Discovery 50%
  • Information Processing System 50%
  27 Citations (Scopus)

• Learning the Coordinate Gradients

  Yiming, Y., Qiang, W. & Campbell, I., Sept 2011, In: Advances in Computational Mathematics. 37, 3, p. 355-378

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Feature Selection 100%
  • Support Vector Machine 50%
  • Dual Problem 50%
  • Quadratic Programming 50%
  • Multitask Learning 50%
  10 Citations (Scopus)
• 2010

  Rademacher chaos complexities for learning the kernel

  Ying, Y. & Campbell, I., 2010, In: Neural Computation. 22, 11, p. 2858 - 2886 28 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Integral 100%
  • radial base 100%
  • Supremum 50%
  • Metric Entropy 50%
  • Error Rate 50%
  27 Citations (Scopus)
• 2009

  Bayesian Unsupervised Learning with Multiple Data Types

  Phaedra, A., Yiming, Y. & Campbell, I., Jun 2009, In: Statistical Applications in Genetics and Molecular Biology. 8, 29 p., Article 27.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Algorithmic Approach 100%
  • Multiple Data Type 100%
  • Unsupervised Learning 100%
  • Bayesian 100%
  • File Format 100%
  11 Citations (Scopus)

• Enhanced Protein Fold Recognition through a Novel Data Integration Approach

  Yiming, Y., Kaizhu, H. & Campbell, I., 2009, In: BMC Bioinformatics. 10, p. 267 - 285 18 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Data Source 100%
  • Data Integration 100%
  • Protein Tertiary Structure 100%
  • Protein Function 25%
  • Kernel Method 25%
  41 Citations (Scopus)
• 2008

  A marginalized variational Bayesian approach to the analysis of array data

  Ying, Y., Li, P. & Campbell, I. C. G., 17 Dec 2008, In: BMC Proceedings. 2 (Suppl 4), 7 p., 57.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  Open Access

  File

  • Bayesian Approach 100%
  • Array Data 100%
  • Process Variable 50%
  • Model Parameter 50%
  • Dirichlet 50%
  289 Downloads (Pure)
• 2007

  Mechanisms of Disease: biomarkers and molecular targets from microarray gene expression studies in prostate cancer

  Colin S., C., Campbell, I. & Sameer, J., 2007, In: Nature Clinical Practice Urology. 4, p. 677 - 687 10 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  40 Citations (Scopus)
• 2006

  Estimating dataset size requirements for classifying DNA microarray data

  Tamayo, P., Rogers, S., Rifkin, R., Engle, A., Campbell, I., Golub, T., Mesirov, J. & Mukherjee, S., Apr 2006, In: Journal of Computational Biology. 10 (2), p. 119 - 142 24 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  217 Citations (Scopus)

• The Impact of Bioinformatics in Uro-oncology

  Sashi, K. & Campbell, I., 2006, In: BJU International. 98, p. 249 - 251 3 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

• The latent process decomposition of cDNA microarray data sets

  Rogers, S., Girolami, M., Campbell, I. & Breitling, R., Jun 2006, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2 (2), p. 143 - 156 14 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  78 Citations (Scopus)
• 2002

  Bayesian automatic relevance determination algorithms for classifying gene expression data

  Li, Y., Campbell, I. & Tipping, M., Oct 2002, In: Bioinformatics. 18 (10), p. 1332 - 1339 8 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  146 Citations (Scopus)
• 1999

  The Automated Identification of Tubercle Bacilli in Sputum: Preliminary Investigation

  Veropoulos, K., Learmonth, G., Campbell, I., Knight, B. & Simpson, J., 1999, In: Analytical and Quantitative Cytology and Histology. 21, 4, p. 277 - 281

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  59 Citations (Scopus)
• 1998

  Image processing and neural computing used in the diagnosis of Tuberculosis

  Veropoulos, K., Campbell, I. & Learmonth, G., 1998, In: Intelligent Methods in Healthcare and Medical Applications. 98/514, p. 1 - 4

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  37 Citations (Scopus)
• 1996

  Central pattern generation in a model neuronal network with post inhibitory rebound and reciprocal inhibition

  Coombes, S., Doole, S. & Campbell, I., 1996, In: Neural Network World. 6(2), p. 155 - 162

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  2 Citations (Scopus)
• 1995

  Order parameter evolution in a feedforward neural network

  Campbell, I., Wong, K. & Sherrington, D., 1995, In: Journal of Physics A: Mathematical and General. A28, p. 1603 - 1614

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  3 Citations (Scopus)

• The target switch algorithm: A constructive learning procedure for feedforward neural networks

  Campbell, I. & Perez Vicente, C., 1995, In: Neural Computation. 7, p. 1245 - 1264

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
• 1993

  Neural Networks with Sign-Constrained Weights

  Campbell, I., 1993, In: Neural Computing and Applications. 1, p. 188 - 192 4 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
• 1992

  Attractor Structure of Constrained Neural Networks at Finite Temperature

  Campbell, I., 1992, In: Artificial Neural Networks, 2. p. 191 - 194 3 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

• Competitive Attraction in Neural Networks with sign constrained weights

  Wong, K. & Campbell, I., 1992, In: Journal of Physics A: Mathematical and General. 25, p. 2227 - 2242

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  4 Citations (Scopus)

• Neural Networks with Dynamical Thresholds

  Campbell, I. & Wong, K., 1992, In: Physica A: Statistical Mechanics and its Applications. 185, p. 378 - 384 6 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

• Neural Networks with Dynamic Thresholds

  Campbell, I., 1992, In: Physica A: Statistical Mechanics and its Applications.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

• The Generalisation Ability of Dilute Attractor Neural Networks

  Campbell, I., 1992, In: Artificial Neural Networks, 2. p. 187 - 190 3 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
• 1991

  On the Storage Capacity of Neural Networks with Sign-Constrained Weights

  Campbell, I., 1991, In: Journal of Physics A: Mathematical and General. A24, p. 93 - 95 2 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  5 Citations (Scopus)