Projects per year
Personal profile
Research interests
Research in my group involves the use of biomolecular simulation to investigate and predict the behaviour of biomolecules. Of particular interest are enzymes and their specificity, catalysis and dynamics. The main techniques used are combined quantum mechanical / molecular mechanical modelling (QM/MM) and molecular dynamics simulation. The current primary area of interest is the use and development of biomolecular simulation protocols to aid development of biocatalysts.
Starting as a BBSRC David Phillips Fellow (2015-2021) I investigated biosynthetic enzymes that are responsible for a wide range of natural products, such as terpene and polyketide synthases. To efficiently tackle the chemical and structural complexity involved in the catalytic cycles of these enzymes, new simulation protocols and methods are developed and applied. By modifying enzymes according to predictions from simulation, in collaboration with experimentalists, the aim is to develop new biocatalysts for the sustainable production of high-value chemicals.
Similar methods are also used to gain insights for tackling the important problem of antibiotic resistance. We study a range of beta-lactamase enzymes, in particular focusing on how these can change (evolve) to efficiently breakdown even so-called 'last resort' antiobiotic treatments.
Our overall research interests are: enzymes involved in antibiotic resistance, computational simulation methods to aid enzyme engineering and (biologic) drug design, and understanding the fundamental principles of enzyme catalysis.
Research Groups and Themes
- BcompB
Keywords
- BrisSynBio
- Centre for Computational Chemistry
- enzyme catalysis
- Computational and Theoretical Chemistry
- Bristol Computational Biochemistry
Fingerprint
- 1 Similar Profiles
Collaborations and top research areas from the last five years
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Resistance to β-lactam antibiotics: Exploring the mechanism and inhibition of Class C β-lactamases
Van der Kamp, M. W. (Principal Investigator)
1/02/23 → 31/01/25
Project: Research
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Multiscale simulation with Machine-Learned potentials for better G-quadruplex ligand design
Van der Kamp, M. W. (Principal Investigator)
1/03/24 → 21/05/24
Project: Research
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Simulating catalysis: Multiscale embedding of machine learning potentials
Van der Kamp, M. W. (Principal Investigator)
1/05/21 → 30/04/24
Project: Research, Parent
Research output
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4-Thiaproline accelerates the slow folding phase of proteins containing cis prolines in the native state by two orders of magnitude
Loughlin, J. O., Zinovjev, K., Napolitano, S., van der Kamp, M. & Rubini, M., 23 Jan 2024, In: Protein science : a publication of the Protein Society. 33, 2, 12 p., e4877.Research output: Contribution to journal › Article (Academic Journal) › peer-review
Open Access1 Citation (Scopus) -
Antibiotic Origami: Selective Formation of Spirotetronates in Abyssomicin Biosynthesis
Mbatha, S. Z., Back, C., Devine, A. J., Mulliner, H. M., Johns, S. T., Lewin, H., Cheung, K. A., Zorn, K., Stach, J. E. M., Hayes, M. A., Van der Kamp, M. W., Race, P. R. & Willis, C. L., 12 Aug 2024, (E-pub ahead of print) In: Chemical Science. 15, 34, p. 14009-14015 7 p.Research output: Contribution to journal › Article (Academic Journal) › peer-review
Open Access -
Cooperative Conformational Transitions Underpin the Activation Heat Capacity in the Temperature Dependence of Enzyme Catalysis
Walker, E. J., Hamill, C. J., Crean, R., Connolly, M. S., Warrender, A. K., Kraakman, K. L., Prentice, E. J., Steyn-Ross, A., Steyn-Ross, M., Pudney, C. R., Van der Kamp, M. W., Schipper, L. A., Mulholland, A. J. & Arcus, V. L., 5 Apr 2024, In: ACS Catalysis. 14, 7, p. 4379-4394 16 p.Research output: Contribution to journal › Article (Academic Journal) › peer-review
Open Access3 Citations (Scopus)
Datasets
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Electric fields are a key determinant of carbapenemase activity in class A β-lactamases
Jabeen, H. (Creator), Bunzel, A. (Creator), Mulholland, A. (Contributor), Kamp, M. V. D. (Contributor), Beer, M. (Contributor) & Spencer, J. (Contributor), University of Bristol, 12 Apr 2024
DOI: 10.5523/bris.1wk7t08aubwq722s7fs9l5lw8u, http://data.bris.ac.uk/data/dataset/1wk7t08aubwq722s7fs9l5lw8u
Dataset
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Selected simulation input and output for patchoulol synthase and germacradien-11-ol synthase
Kamp, M. V. D. (Creator), Johns, S. (Creator) & Walters, R. K. (Creator), Zenodo, 20 Apr 2023
DOI: 10.5281/zenodo.7824978, https://zenodo.org/record/7824978
Dataset
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Molcular Dynamics Data for Therapeutic High Affinity T Cell Receptor Targeting a KRAS G12D Cancer Neoantigen
Van der Kamp, M. (Creator) & Hartt, A. (Creator), Zenodo, 12 Jul 2022
DOI: 10.5281/zenodo.6839257, https://zenodo.org/record/6839257
Dataset
Activities
- 1 Fellowship awarded competitively
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BBSRC David Phillips Fellowship
Van der Kamp, M. W. (Recipient)
1 Dec 2015 → 30 Nov 2020Activity: Other activity types › Fellowship awarded competitively