Professor Philip C J Donoghue

B.Sc.(Leic.), M.Sc. (Sheff.), Ph.D.(Leic.)

  • BS8 1TQ

20012020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

2020

Categorical versus geometric morphometric approaches to characterising the evolution of morphological disparity in Osteostraci (Vertebrata, stem-Gnathostomata)

Ferron, H. G., Greenwood, J. M., Deline, B., Martinez-Perez, C., Botella, H., Sansom, R., Ruta, M. & Donoghue, P. C. J., 27 Feb 2020, (Accepted/In press) In : Palaeontology.

Research output: Contribution to journalArticle (Academic Journal)

Computational fluid dynamics reveals ecological diversification among stem-gnathostomes

Ferron, H. G., Martinez-Perez, C., Rahman, I. A., Selles de Lucas, V., Botella, H. & Donoghue, P. C. J., 2020, (Submitted) In : Current Biology.

Research output: Contribution to journalArticle (Academic Journal)

1 Downloads (Pure)

Developmental biology of Helicoforamina reveals holozoan affinity, cryptic diversity and adaptation to heterogeneous environments

Yin, Z., Sun, W., Pengju, L., Zhu, M. & Donoghue, P. C. J., 10 Apr 2020, (Accepted/In press) In : Science Advances.

Research output: Contribution to journalArticle (Academic Journal)

Disparities in the analysis of morphological disparity

Guillerme, T., Natalie, C., Brusatte, S., Davis, K., Jackson, A., Gerber, S., Goswami, A., Healy, K., Hopkins, M., Jones, M., Lloyd, G., O'Reilly, J. E., Pate, A., Puttick, M. N., Rayfield, E. J., Saupe, E., Sherratt, E., Slater, G., Weisbecker, V., Thomas, G. & 1 others, Donoghue, P. C. J., 8 Jun 2020, (Accepted/In press) In : Biology Letters.

Research output: Contribution to journalReview article (Academic Journal)

Nucleus preservation in early Ediacaran Weng’an embryo-like fossils, experimental taphonomy of nuclei, and implications for reading the eukaryote fossil record

Sun, W., Yin, Z., Cunningham, J. A., Pengju, L., Zhu, M. & Donoghue, P. C. J., 12 Jun 2020, In : Interface Focus. 10, 4, 10 p., 20200015.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
9 Downloads (Pure)

Performance of a priori and a posteriori calibration strategies in divergence time estimation

Beavan, A. J. S., Donoghue, P. C. J., Beaumont, M. A. & Pisani, D., 18 May 2020, (Accepted/In press) In : Genome Biology and Evolution. evaa105.

Research output: Contribution to journalArticle (Academic Journal)

Plant Evolution: Assembling Land Plants

Donoghue, P. & Paps, J., 20 Jan 2020, In : Current Biology. 30, 2, p. R81-R83 3 p.

Research output: Contribution to journalComment/debate (Academic Journal)

1 Citation (Scopus)

The origin and rise of complex life: progress requires interdisciplinary integration and hypothesis testing

Wood, R., Donoghue, P. C. J., Lenton, T. M., Liu, A. G. S. C. & Poulton, S. W., 12 Jun 2020, In : Interface Focus. 10, 4, 10 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
9 Downloads (Pure)
2019

Anatomy of the Ediacaran rangeomorph Charnia masoni

Dunn, F. S., Wilby, P. R., Kenchington, C. G., Grazhdankin, D. V., Donoghue, P. C. J. & Liu, A. G., 1 Feb 2019, In : Papers in Palaeontology. 5, 1, p. 157-176 20 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
204 Downloads (Pure)

Apparatus architecture of the conodont Nicoraella kockeli (Gondolelloidea, Prioniodinina) constrains functional interpretations

Huang, J., Martinez-Perez, C., Hu, S., Zhang, Q., Zhang, K., Zhou, C-Y., Wen, W., Xie, T., Benton, M., Chen, Z-Q., Luo, M. & Donoghue, P., 17 May 2019, In : Palaeontology. 13 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
14 Downloads (Pure)

Cellular preservation of excysting developmental stages of new eukaryotes from the early Ediacaran Weng'an Biota

Landon, E. N. U., Liu, P-J., Yin, Z-J., Sun, W-C., Shang, X-D. & Donoghue, P. C. J., 1 Dec 2019, In : Palaeoworld. 28, 4, p. 461-468 8 p.

Research output: Contribution to journalArticle (Academic Journal)

2 Citations (Scopus)

Evolution: The Flowering of Land Plant Evolution

Donoghue, P., 5 Aug 2019, In : Current Biology. 29, 15, p. R753-R756 4 p.

Research output: Contribution to journalComment/debate (Academic Journal)

2 Citations (Scopus)

Evolutionary origin of teeth

Rucklin, M. & Donoghue, P., 29 Jul 2019, In : Encyclopaedia of Life Sciences. 7 p.

Research output: Contribution to journalReview article (Academic Journal)

Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.)

de Sousa, F., Foster, P. G., Donoghue, P., Schneider, H. & Cox, C. J., 1 Apr 2019, In : New Phytologist. 222, 1, p. 565-575 11 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
24 Citations (Scopus)
149 Downloads (Pure)

Origin of horsetails and the role of whole-genome duplication in plant macroevolution

Clark, J. W., Puttick, M. N. & Donoghue, P. C. J., 6 Nov 2019, In : Proceedings of the Royal Society B: Biological Sciences. 286, 1914, 10 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
2 Citations (Scopus)
97 Downloads (Pure)

Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model

Puttick, M. N., O'Reilly, J. E., Pisani, D. & Donoghue, P. C. J., Jan 2019, In : Palaeontology. 62, 1, p. 1-17 17 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
4 Citations (Scopus)
165 Downloads (Pure)

The apparatus composition and architecture of Erismodus quadridactylus and the implications for element homology in prioniodinin conodonts

Dhanda, R., Murdock, D. J. E., Repetski, J. E., Donoghue, P. C. J. & Smith, M. P., 1 Nov 2019, In : Papers in Palaeontology. 5, 4, p. 657-677 21 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
2 Citations (Scopus)
10 Downloads (Pure)

The circulatory system of Galeaspida (Vertebrata; stem-Gnathostomata) revealed by synchrotron X-ray tomographic microscopy

Gai, Z-K., Zhu, M. & Donoghue, P. C. J., 1 Dec 2019, In : Palaeoworld. 28, 4, p. 441-460 20 p.

Research output: Contribution to journalArticle (Academic Journal)

2 Citations (Scopus)

The dermal skeleton of the jawless vertebrate Tremataspis mammilata (Osteostraci, stem-Gnathostomata)

O'Shea [deceased], J., Keating, J. & Donoghue, P., 1 Jul 2019, In : Journal of Morphology. 280, 7, p. 999-1025 27 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
1 Citation (Scopus)
11 Downloads (Pure)

The Early Ediacaran Caveasphaera Foreshadows the Evolutionary Origin of Animal-like Embryology

Yin, Z., Vargas, K., Cunningham, J., Bengtson, S., Zhu, M., Marone, F. & Donoghue, P., 16 Dec 2019, In : Current Biology. 29, 24, p. 4307-4314.e2 11 p.

Research output: Contribution to journalArticle (Academic Journal)

2 Citations (Scopus)

The effect of fossil sampling on the estimation of divergence times with the fossilised birth death process

O'Reilly, J. & Donoghue, P., 17 May 2019, (Accepted/In press) In : Systematic Biology. syz037.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
94 Downloads (Pure)

The impact of fossil stratigraphic ranges on tip-calibration, and the accuracy and precision of divergence time estimates

Püschel, H., O'Reilly, J., Pisani, D. & Donoghue, P., 21 Aug 2019, In : Palaeontology. 17 p.

Research output: Contribution to journalArticle (Academic Journal)

Tooth replacement in early sarcopterygians

Doeland, M., Couzens, A. M. C., Donoghue, P. C. J. & Rücklin, M., 13 Nov 2019, In : Royal Society Open Science. 6, 11, 14 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
69 Downloads (Pure)

Tubular microfossils from the Ediacaran Weng’an Biota (Doushantuo Formation, South China) are not early animals

Wei-Chen, S., Yin, Z., Donoghue, P., Pengju, L., Xiao-Dong, S. & Zhu, M., 2 May 2019, In : Palaeoworld. 9 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
2 Citations (Scopus)
15 Downloads (Pure)
2018

Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution

Barba-Montoya, J., dos Reis, M., Harald, S., Donoghue, P. & Yang, Z., 5 Feb 2018, In : New Phytologist. 16 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
35 Citations (Scopus)
263 Downloads (Pure)

Empirical realism of simulated data is more important than the model used to generate it: a reply to Goloboff et al.

O'Reilly, J. E., Puttick, M. N., Pisani, D. & Donoghue, P. C. J., 1 Jul 2018, In : Palaeontology. 61, 4, p. 631-635 5 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
9 Citations (Scopus)
205 Downloads (Pure)

Evolution of jaw disparity in fishes

Hill, J. J., Puttick, M., Stubbs, T., Rayfield, E. & Donoghue, P., 28 May 2018, In : Palaeontology.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
4 Citations (Scopus)
229 Downloads (Pure)

Evolution of metazoan morphological disparity

Deline, B., Greenwood, J. M., Clark, J. W., Puttick, M. N., Peterson, K. J. & Donoghue, P. C. J., 18 Sep 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 38, p. E8909-E8918 10 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
16 Citations (Scopus)
274 Downloads (Pure)

Experimental analysis of soft-tissue fossilization – opening the black box

Purnell, M. A., Donoghue, P., Gabbott, S. E., McNamara, M. E., Murdock, D. J. E. & Sansom, R., 20 Mar 2018, In : Palaeontology. 61, 3

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
16 Citations (Scopus)
160 Downloads (Pure)

Gondolelloid multielement conodont apparatus (Nicoraella) from the Middle Triassic of Yunnan Province, southwestern China

Huang, J., Hu, S., Zhang, Q., Donoghue, P., Benton, M., Zhou, C., Martinez-Perez, C., Wen, W., Xie, T., Chen, Z-Q., Luo, M., Yao, H. & Zhang, K., 20 Jul 2018, In : Palaeogeography, Palaeoclimatology, Palaeoecology. 13 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
7 Citations (Scopus)
97 Downloads (Pure)

Integrated genomic and fossil evidence illuminates life’s early evolution and eukaryote origin

Betts, H. C., Puttick, M. N., Clark, J. W., Williams, T. A., Donoghue, P. C. J. & Pisani, D., Oct 2018, In : Nature Ecology and Evolution. 2, 10, p. 1556-1562 7 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
59 Citations (Scopus)
311 Downloads (Pure)

Middle Triassic conodont apparatus architecture revealed by synchrotron X-ray microtomography

Huang, J-Y., Martinez-Perez, C., Hu, S-X., Donoghue, P., Zhang, Q-Y., Zhou, C-Y., Wen, W., Benton, M., Luo, M., Yao, H. & Zhang, K., 23 Aug 2018, In : Palaeoworld. 12 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
3 Citations (Scopus)
100 Downloads (Pure)

Reply to Hedges et al. Accurate timetrees do indeed require accurate calibrations

Morris, J. L., Puttick, M., Clark, J., Edwards, D., Kenrick, P., Pressel, S., Wellman, C. H., Yang, Z., Schneider, H. & Donoghue, P., 9 Oct 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 41, p. E9512-9513 2 p.

Research output: Contribution to journalComment/debate (Academic Journal)

Open Access
File
2 Citations (Scopus)
227 Downloads (Pure)

The Efficacy of Consensus Tree Methods for Summarizing Phylogenetic Relationships from a Posterior Sample of Trees Estimated from Morphological Data

O'Reilly, J. & Donoghue, P., 1 Mar 2018, In : Systematic Biology. 67, 2, p. 354-362 9 p., syz086.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
3 Citations (Scopus)
140 Downloads (Pure)

The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte

Puttick, M., Morris, J. L., Williams, T., Cox, C. J., Edwards, D., Kenrick, P., Pressel, S., Wellman, C. H., Harald, S., Pisani, D. & Donoghue, P., 5 Mar 2018, In : Current Biology. 28, 5, p. 733-745.e2 16 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
107 Citations (Scopus)
281 Downloads (Pure)

The nature of aspidin and the evolutionary origin of bone

Keating, J., Marone, F., Donoghue, P. & Marquart, C. L., 1 Sep 2018, In : Nature Ecology and Evolution. 2, 9, p. 1501-1506 6 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
4 Citations (Scopus)
224 Downloads (Pure)

The timescale of early land plant evolution

Morris, J. L., Puttick, M. N., Clark, J. W., Edwards, D., Kenrick, P., Pressel, S., Wellman, C. H., Yang, Z., Schneider, H. & Donoghue, P. C. J., 6 Mar 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 10, p. E2274-E2283 10 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
151 Citations (Scopus)
457 Downloads (Pure)

Unicellular Origin of the Animal MicroRNA Machinery

Bråte, J., Neumann, R., Fromm, B., Haraldsen, A., Tarver, J., Suga, H., Donoghue, P., Peterson, K. J., Ruiz-Trillo, I., Grini, P. & Shalchian-Tabrizi, K., 22 Oct 2018, In : Current Biology. 28, 20, p. 3288-3295.e5 14 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
12 Citations (Scopus)
400 Downloads (Pure)

Vascular structure of the earliest shark teeth

Martinez-Perez, C., Martin-Lazaro, A., Ferron, H. G., Kirstein, M., Donoghue, P. & Botella, H., 2018, In : Acta Geologica Polonica. 68, 3, p. 457-465 9 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
1 Citation (Scopus)
38 Downloads (Pure)

Well-annotated microRNAomes do not evidence pervasive miRNA loss

Tarver, J., Taylor, R., Puttick, M., Lloyd, G., Pett, W., Fromm, B., Schirrmeister, B., Pisani, D., Peterson, K. J. & Donoghue, P., 18 May 2018, In : Genome Biology and Evolution. 10, 6, p. 1457-1470

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
8 Citations (Scopus)
163 Downloads (Pure)
2017

Constraining the timing of whole genome duplication in plant evolutionary history

Clark, J. W. & Donoghue, P. C. J., 12 Jul 2017, In : Proceedings of the Royal Society B: Biological Sciences. 284, 1858, 20170912.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
14 Citations (Scopus)
235 Downloads (Pure)

Ediacaran developmental biology

Dunn, F., Liu, A. & Donoghue, P., 3 Nov 2017, In : Biological Reviews. 19 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
20 Citations (Scopus)
286 Downloads (Pure)

Evolution: divining the nature of the ancestral vertebrate

Donoghue, P., 3 Apr 2017, In : Current Biology. 27, 7, p. R277-R279 3 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
2 Citations (Scopus)
213 Downloads (Pure)

MicroRNA annotation of plant genomes - Do it right or not at all

Taylor, R. S., Tarver, J. E., Foroozani, A. & Donoghue, P. C. J., Feb 2017, In : BioEssays. 39, 2, 6 p., 1600113.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
15 Citations (Scopus)
267 Downloads (Pure)

Nuclei and nucleoli in embryo-like fossils from the Ediacaran Weng’an Biota

Yin, Z., Cunningham, J., Vargas, K., Bengtson, S., Zhu, M. & Donoghue, P., Oct 2017, In : Precambrian Research. 301, p. 145-151 7 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
10 Citations (Scopus)
232 Downloads (Pure)

Open data and digital morphology

Davies, T., Rahman, I., Lautenschlager, S., Cunningham, J. A., Asher, R. J., Barrett, P. M., Bates, K. T., Bengtson, S., Benson, R. B. J., Boyer, D. M., Braga, J., Bright, J. A., Claessens, L. P. A. M., Cox, P. G., Dong, X-P., Evans, A. R., Falkingham, P. L., Friedman, M., Garwood, R. J., Goswami, A. & 25 others, Hutchinson, J. R., Jeffery, N. S., Johanson, Z., Lebrun, R., Martínez-Pérez, C., Marugán-Lobón, J., O'Higgins, P. M., Metscher, B., Orliac, M., Rowe, T. B., Rücklin, M., Sánchez-Villagra, M. R., Shubin, N. H., Smith, S. Y., Starck, J. M., Stringer, C., Summers, A. P., Sutton, M. D., Walsh, S. A., Weisbecker, V., Witmer, L. M., Wroe, S., Yin, Z., Rayfield, E. J. & Donoghue, P. C. J., 12 Apr 2017, In : Proceedings of the Royal Society B: Biological Sciences. 284, 1852, 10 p., 20170194.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
51 Citations (Scopus)
311 Downloads (Pure)

Parsimony and Maximum Likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: A response to Brown et al.

Puttick, M. N., O’Reilly, J. E., Oakley, D., Tanner, A. R., Fleming, J. F., Clark, J., Holloway, L., Lozano-Fernandez, J., Parry, L. A., Tarver, J. E., Pisani, D. & Donoghue, P. C. J., 11 Oct 2017, In : Proceedings of the Royal Society B: Biological Sciences. 284, 1864, 3 p., 20171636.

Research output: Contribution to journalComment/debate (Academic Journal)

Open Access
File
11 Citations (Scopus)
220 Downloads (Pure)

Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data

O'Reilly, J., Puttick, M., Pisani, D. & Donoghue, P., 31 Oct 2017, In : Palaeontology. 14 p.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
25 Citations (Scopus)
251 Downloads (Pure)

RelTime rates collapse to a strict clock when estimating the timeline of animal diversification

Lozano-Fernandez, J., dos Reis, M., Donoghue, P. & Pisani, D., 1 May 2017, In : Genome Biology and Evolution. 9, 5, p. 1320-1328 9 p., evx079.

Research output: Contribution to journalArticle (Academic Journal)

Open Access
File
14 Citations (Scopus)
202 Downloads (Pure)