4-Thiaproline accelerates the slow folding phase of proteins containing cis prolines in the native state by two orders of magnitude

Jennie O' Loughlin, Kirill Zinovjev, Silvia Napolitano, Marc van der Kamp, Marina Rubini*

*Corresponding author for this work

Research output: Contribution to journalArticle (Academic Journal)peer-review

1 Citation (Scopus)

Abstract

The cis/trans isomerization of peptidyl-prolyl peptide bonds is often the bottleneck of the refolding reaction for proteins containing cis proline residues in the native state. Proline (Pro) analogues, especially C4-substituted fluoroprolines, have been widely used in protein engineering to enhance the thermodynamic stability of peptides and proteins and to investigate folding kinetics. 4-thiaproline (Thp) has been shown to bias the ring pucker of Pro, to increase the cis population percentage of model peptides in comparison to Pro, and to diminish the activation energy barrier for the cis/trans isomerization reaction. Despite its intriguing properties, Thp has been seldom incorporated into proteins. Moreover, the impact of Thp on the folding kinetics of globular proteins has never been reported. In this study, we show that upon incorporation of Thp at cisPro76 into the thioredoxin variant Trx1P the half-life of the refolding reaction decreased from ~2 hours to ~35 seconds. A dramatic acceleration of the refolding rate could be observed also for the protein pseudo wild-type barstar upon replacement of cisPro48 with Thp. Quantum chemical calculations suggested that the replacement of the Cγ H2 group by a sulfur atom in the pyrrolidine ring, might lower the barrier for cis/trans rotation due to a weakened peptide bond. The protein variants retained their thermodynamic stability upon incorporation of Thp, while the catalytic and enzymatic activities of the modified Trx1P remained unchanged. Our results show that the Pro isostere Thp might accelerate the rate of the slow refolding reaction for proteins containing cis proline residues in the native state, independent from the local structural environment. This article is protected by copyright. All rights reserved.

Original languageEnglish
Article numbere4877
Number of pages12
JournalProtein science : a publication of the Protein Society
Volume33
Issue number2
Early online date19 Dec 2023
DOIs
Publication statusPublished - 23 Jan 2024

Bibliographical note

Funding Information:
Marina Rubini and Jennie O' Loughlin are grateful to the UCD School of Chemistry and to the Seed Funding Scheme (SF1888) for financial support. Marina Rubini would like to thank Vincent Conticello for the pWK2 plasmid containing the E. coli ProRS (C443G) gene and Nediljko Budisa for the pQE80L-b* (P28A) plasmid. Marc van der Kamp and Kirill Zinovjev thank BBSRC for funding (BB/R001332/1). Density functional calculations were conducted using the computational facilities of the Advanced Computing Research Centre, University of Bristol. Open access funding provided by IReL.

Publisher Copyright:
© 2023 The Authors.

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