Projects per year
Abstract
Projector-based embedding has recently emerged as a robust and accurate method for the calculation of various electronic molecular properties. We present the coupling of projector embedding with quantum mechanical / molecular mechanical (QM/MM) modeling and apply it for the first time to an enzyme-catalyzed reaction. Using projector-based embedding, we combine coupled-cluster theory, density-functional theory (DFT) and molecular mechanics to compute energies for the proton abstraction from acetyl-coenzyme A by citrate synthase. By embedding correlated ab initio methods in DFT we eliminate functional sensitivity and obtain high-accuracy profiles in a procedure that is straightforward to apply.
| Original language | English |
|---|---|
| Pages (from-to) | 2689-2697 |
| Number of pages | 9 |
| Journal | Journal of Chemical Theory and Computation |
| Volume | 12 |
| Issue number | 6 |
| Early online date | 19 May 2016 |
| DOIs | |
| Publication status | Published - 14 Jun 2016 |
Research Groups and Themes
- Bristol BioDesign Institute
- Physical & Theoretical
Keywords
- synthetic biology
- QM/MM
- CCSD(T)
- multiscale modeling
- DFT
- Enzyme reaction
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Dive into the research topics of 'A Projector-Embedding Approach for Multiscale Coupled-Cluster Calculations Applied to Citrate Synthase'. Together they form a unique fingerprint.Projects
- 6 Finished
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Multi-scale enzyme modelling for SynBio: optimizing biocatalysts for selective synthesis of bioactive compounds
Van der Kamp, M. W. (Principal Investigator)
1/12/15 → 31/05/21
Project: Research
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CCP-BioSim: Biomolecular Simulation at the Life Sciences Interface
Mulholland, A. J. (Principal Investigator)
1/07/15 → 30/04/21
Project: Research
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Computational tools for enzyme engineering: bridging the gap between enzymologists and expert simulation
Mulholland, A. J. (Principal Investigator)
15/07/14 → 15/06/16
Project: Research
Profiles
-
Professor Adrian J Mulholland
- Infection and Immunity
- School of Chemistry - Professor
Person: Academic , Member
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