Activation loop targeting strategy for design of receptor-interacting protein kinase 2 (RIPK2) inhibitors

Chalada Suebsuwong, Daniel M. Pinkas, Soumya S. Ray, Joshua C. Bufton, Bing Dai, Alex N. Bullock, Alexei Degterev*, Gregory D. Cuny

*Corresponding author for this work

Research output: Contribution to journalArticle (Academic Journal)

2 Citations (Scopus)
254 Downloads (Pure)

Abstract

Development of selective kinase inhibitors remains a challenge due to considerable amino acid sequence similarity among family members particularly in the ATP binding site. Targeting the activation loop might offer improved inhibitor selectivity since this region of kinases is less conserved. However, the strategy presents difficulties due to activation loop flexibility. Herein, we report the design of receptor-interacting protein kinase 2 (RIPK2) inhibitors based on pan-kinase inhibitor regorafenib that aim to engage basic activation loop residues Lys169 or Arg171. We report development of CSR35 that displayed >10-fold selective inhibition of RIPK2 versus VEGFR2, the target of regorafenib. A co-crystal structure of CSR35 with RIPK2 revealed a resolved activation loop with an ionic interaction between the carboxylic acid installed in the inhibitor and the side-chain of Lys169. Our data provides principle feasibility of developing activation loop targeting type II inhibitors as a complementary strategy for achieving improved selectivity.

Original languageEnglish
Pages (from-to)577-583
Number of pages7
JournalBioorganic and Medicinal Chemistry Letters
Volume28
Issue number4
Early online date31 Jan 2018
DOIs
Publication statusPublished - 15 Feb 2018

Keywords

  • Activation loop
  • Inhibitor
  • Kinase
  • Receptor-interacting protein kinase 2
  • RIPK2

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