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Assimilation of microbial and plant carbon by active prokaryotic and fungal populations in glacial forefields

Research output: Contribution to journalArticle

  • Thomas Rime
  • Martin Hartmann
  • Beat Stierli
  • Alexandre M B Anesio
  • Beat Frey
Original languageEnglish
Pages (from-to)30-41
Number of pages12
JournalSoil Biology and Biochemistry
Early online date9 Apr 2016
DateAccepted/In press - 22 Mar 2016
DateE-pub ahead of print - 9 Apr 2016
DatePublished (current) - Jul 2016


Microbial communities and soil carbon (C) have been shown to vary in response to increasing vegetation cover during soil development after deglaciation. However, little is known about the ability of microorganisms to utilize various C sources in glacier forefield soils. We supplied ecologically relevant 13C-labeled C sources (Chlorella, Penicillium and Festuca) to three distinct environments (supraglacial sediments, barren soils and vegetated soils) of the Damma glacier area to monitor 13CO2 production. We identified prokaryotic and fungal populations able to utilize these sources by using DNA-stable isotope probing coupled with Illumina MiSeq sequencing of ribosomal markers. A high initial 13CO2 pulse indicated that 13C-labeled microbial and plant material were consumed. The 13C-enriched DNA results indicated that betaproteobacterial taxa affiliated to the families Oxalobacteraceae and Comamonadaceae were important players in C utilization from different sources and present in all environments. In contrast, different fungal taxa played different roles in C degradation depending on the soil environment. Overall, our findings reveal that C utilization is driven by similar prokaryotic populations along a glacier forefield, while the distribution of active fungal populations are more influenced by environmental factors.

    Research areas

  • Illumina MiSeq sequencing, DNA-stable isotope probing, Glacier forefield, Microbiota

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  • Manuscript_SBB11067

    Rights statement: This is the author accepted manuscript (AAM). The final published version (version of record) is available online via Elsevier at Please refer to any applicable terms of use of the publisher.

    Accepted author manuscript, 1.33 MB, PDF document


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