Automated Visualization of Genetic Designs Using DNAplotlib

Vittorio Bartoli; Daniel Dixon; Thomas Gorochowski

doi:10.1007/978-1-4939-7795-6_22

Automated Visualization of Genetic Designs Using DNAplotlib

Vittorio Bartoli, Daniel Dixon, Thomas Gorochowski

Research output: Chapter in Book/Report/Conference proceeding › Chapter in a book

6 Citations (Scopus)

252 Downloads (Pure)

Abstract

Visualization of complex genetic systems can help efficiently communicate important design features and clearly illustrate overall structures. To aid in the creation of such diagrams, standards like the Synthetic Biology Open Language Visual (SBOLv) have been established to ensure that specific symbols and shapes convey the same meaning for genetic parts across the field. Here, we describe several ways that the computational tool DNAplotlib can be used to automate the generation of SBOLv standard-compliant diagrams covering simple genetic designs to large libraries of genetic constructs.

Original language	English
Title of host publication	Synthetic Biology
Subtitle of host publication	Methods and Protocols
Editors	Jeff Braman
Publisher	Humana Press
Pages	399-409
Number of pages	11
ISBN (Electronic)	9781493977956
ISBN (Print)	9781493977949
DOIs	https://doi.org/10.1007/978-1-4939-7795-6_22
Publication status	Published - 13 May 2018

Publication series

Name	Methods in Molecular Biology
Volume	1772
ISSN (Print)	1064-3745

Structured keywords

Bristol BioDesign Institute
BrisSynBio

Keywords

visualization
genetic design
standardization
SBOLv
synthetic biology
systems biology

Access to Document

10.1007/978-1-4939-7795-6_22

Full-text PDF (accepted author manuscript)
This is the author accepted manuscript (AAM). The final published version (version of record) is available online via Springer at https://link.springer.com/protocol/10.1007/978-1-4939-7795-6_22. Please refer to any applicable terms of use of the publisher.
Accepted author manuscript, 424 KB

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Tuneable Synthetic Genetic Devices
Author: Bartoli, V., 29 Sep 2020
Supervisor: Di Bernardo, M. (Supervisor) & Gorochowski, T. (Supervisor)
Student thesis: Doctoral Thesis › Doctor of Philosophy (PhD)

File

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Automated Visualization of Genetic Designs Using DNAplotlib

Abstract

Publication series

Structured keywords

Keywords

Access to Document

Tuneable Synthetic Genetic Devices

Cite this