Abstract
Visualization of complex genetic systems can help efficiently communicate important design features and clearly illustrate overall structures. To aid in the creation of such diagrams, standards like the Synthetic Biology Open Language Visual (SBOLv) have been established to ensure that specific symbols and shapes convey the same meaning for genetic parts across the field. Here, we describe several ways that the computational tool DNAplotlib can be used to automate the generation of SBOLv standard-compliant diagrams covering simple genetic designs to large libraries of genetic constructs.
| Original language | English |
|---|---|
| Title of host publication | Synthetic Biology |
| Subtitle of host publication | Methods and Protocols |
| Editors | Jeff Braman |
| Publisher | Humana Press |
| Pages | 399-409 |
| Number of pages | 11 |
| ISBN (Electronic) | 9781493977956 |
| ISBN (Print) | 9781493977949 |
| DOIs | |
| Publication status | Published - 13 May 2018 |
Publication series
| Name | Methods in Molecular Biology |
|---|---|
| Volume | 1772 |
| ISSN (Print) | 1064-3745 |
Structured keywords
- Bristol BioDesign Institute
- BrisSynBio
Keywords
- visualization
- genetic design
- standardization
- SBOLv
- synthetic biology
- systems biology
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Cite this
Bartoli, V., Dixon, D., & Gorochowski, T. (2018). Automated Visualization of Genetic Designs Using DNAplotlib. In J. Braman (Ed.), Synthetic Biology: Methods and Protocols (pp. 399-409). (Methods in Molecular Biology; Vol. 1772). Humana Press. https://doi.org/10.1007/978-1-4939-7795-6_22