Abstract
Visualization of complex genetic systems can help efficiently communicate important design features and clearly illustrate overall structures. To aid in the creation of such diagrams, standards like the Synthetic Biology Open Language Visual (SBOLv) have been established to ensure that specific symbols and shapes convey the same meaning for genetic parts across the field. Here, we describe several ways that the computational tool DNAplotlib can be used to automate the generation of SBOLv standard-compliant diagrams covering simple genetic designs to large libraries of genetic constructs.
| Original language | English |
|---|---|
| Title of host publication | Synthetic Biology |
| Subtitle of host publication | Methods and Protocols |
| Editors | Jeff Braman |
| Publisher | Humana Press |
| Pages | 399-409 |
| Number of pages | 11 |
| ISBN (Electronic) | 9781493977956 |
| ISBN (Print) | 9781493977949 |
| DOIs | |
| Publication status | Published - 13 May 2018 |
Publication series
| Name | Methods in Molecular Biology |
|---|---|
| Volume | 1772 |
| ISSN (Print) | 1064-3745 |
Research Groups and Themes
- Bristol BioDesign Institute
- BrisSynBio
Keywords
- visualization
- genetic design
- standardization
- SBOLv
- synthetic biology
- systems biology
Fingerprint
Dive into the research topics of 'Automated Visualization of Genetic Designs Using DNAplotlib'. Together they form a unique fingerprint.Student theses
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Tuneable Synthetic Genetic Devices
Bartoli, V. (Author), Di Bernardo, M. (Supervisor) & Gorochowski, T. (Supervisor), 29 Sept 2020Student thesis: Doctoral Thesis › Doctor of Philosophy (PhD)
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