Badger--an accessible genome exploration environment

Ben Elsworth, Martin Jones, Mark Blaxter

Research output: Contribution to journalArticle (Academic Journal)peer-review

4 Citations (Scopus)

Abstract

SUMMARY: High-quality draft genomes are now easy to generate, as sequencing and assembly costs have dropped dramatically. However, building a user-friendly searchable Web site and database for a newly annotated genome is not straightforward. Here we present Badger, a lightweight and easy-to-install genome exploration environment designed for next generation non-model organism genomes.

AVAILABILITY: Badger is released under the GPL and is available at http://badger.bio.ed.ac.uk/. We show two working examples: (i) a test dataset included with the source code, and (ii) a collection of four filarial nematode genomes.

CONTACT: mark.blaxter@ed.ac.uk.

Original languageEnglish
Pages (from-to)2788-9
Number of pages2
JournalBioinformatics
Volume29
Issue number21
DOIs
Publication statusPublished - 1 Nov 2013

Keywords

  • Genes
  • Genome
  • Genomics
  • Internet
  • Software

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