CerealsDB—new tools for the analysis of the wheat genome: update 2020

Paul A Wilkinson; Alexandra M Allen; Simon Tyrrell; Luzie U Wingen; Xingdong Bian; Mark O Winfield; Amanda Burridge; Daniel S Shaw; Jan Zaucha; Simon Griffiths; Robert P Davey; Keith J Edwards; Gary L A Barker

doi:10.1093/database/baaa060

CerealsDB—new tools for the analysis of the wheat genome: update 2020

Paul A Wilkinson^*, Alexandra M Allen, Simon Tyrrell, Luzie U Wingen, Xingdong Bian, Mark O Winfield, Amanda Burridge, Daniel S Shaw, Jan Zaucha, Simon Griffiths, Robert P Davey, Keith J Edwards, Gary L A Barker

^*Corresponding author for this work

Research output: Contribution to journal › Article (Academic Journal) › peer-review

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Abstract

CerealsDB (www.cerealsdb.uk.net) is an online repository of mainly hexaploid wheat (Triticum aestivum) single nucleotide polymorphisms (SNPs) and genotyping data. The CerealsDB website has been designed to enable wheat breeders and scientists to select the appropriate markers for research breeding tasks, such as marker-assisted selection. We report a large update of genotyping information for over 6000 wheat accessions and describe new webtools for exploring and visualizing the data. We also describe a new database of quantitative trait loci that links phenotypic traits to CerealsDB SNP markers and allelic scores for each of those markers. CerealsDB is an open-access website that hosts information on wheat SNPs considered useful for both plant breeders and research scientists. The latest CerealsDB database is available at https://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php.

Original language	English
Article number	baaa060
Number of pages	13
Journal	Database
Volume	2020
DOIs	https://doi.org/10.1093/database/baaa060
Publication status	Published - 4 Aug 2020

Bibliographical note

Keywords

Breeding
Databases, Genetic
Edible Grain/genetics
Genome, Plant/genetics
Polymorphism, Single Nucleotide/genetics
Quantitative Trait Loci/genetics
Software
Triticum/genetics

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title = "CerealsDB—new tools for the analysis of the wheat genome: update 2020",

abstract = "CerealsDB (www.cerealsdb.uk.net) is an online repository of mainly hexaploid wheat (Triticum aestivum) single nucleotide polymorphisms (SNPs) and genotyping data. The CerealsDB website has been designed to enable wheat breeders and scientists to select the appropriate markers for research breeding tasks, such as marker-assisted selection. We report a large update of genotyping information for over 6000 wheat accessions and describe new webtools for exploring and visualizing the data. We also describe a new database of quantitative trait loci that links phenotypic traits to CerealsDB SNP markers and allelic scores for each of those markers. CerealsDB is an open-access website that hosts information on wheat SNPs considered useful for both plant breeders and research scientists. The latest CerealsDB database is available at https://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php.",

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note = "{\textcopyright} The Author(s) 2020. Published by Oxford University Press.",

year = "2020",

month = aug,

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doi = "10.1093/database/baaa060",

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AU - Wilkinson, Paul A

AU - Allen, Alexandra M

AU - Tyrrell, Simon

AU - Wingen, Luzie U

AU - Bian, Xingdong

AU - Winfield, Mark O

AU - Burridge, Amanda

AU - Shaw, Daniel S

AU - Zaucha, Jan

AU - Griffiths, Simon

AU - Davey, Robert P

AU - Edwards, Keith J

AU - Barker, Gary L A

PY - 2020/8/4

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AB - CerealsDB (www.cerealsdb.uk.net) is an online repository of mainly hexaploid wheat (Triticum aestivum) single nucleotide polymorphisms (SNPs) and genotyping data. The CerealsDB website has been designed to enable wheat breeders and scientists to select the appropriate markers for research breeding tasks, such as marker-assisted selection. We report a large update of genotyping information for over 6000 wheat accessions and describe new webtools for exploring and visualizing the data. We also describe a new database of quantitative trait loci that links phenotypic traits to CerealsDB SNP markers and allelic scores for each of those markers. CerealsDB is an open-access website that hosts information on wheat SNPs considered useful for both plant breeders and research scientists. The latest CerealsDB database is available at https://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php.

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KW - Genome, Plant/genetics

KW - Polymorphism, Single Nucleotide/genetics

KW - Quantitative Trait Loci/genetics

KW - Software

KW - Triticum/genetics

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DO - 10.1093/database/baaa060

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VL - 2020

JO - Database

JF - Database

M1 - baaa060

ER -

CerealsDB—new tools for the analysis of the wheat genome: update 2020

Abstract

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Keywords

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