Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut

Heath E. O'Brien*, Shalabh Thakur, Yunchen Gong, Pauline Fung, Jianfeng Zhang, Lijie Yuan, Pauline W. Wang, Choseung Yong, Marco Scortichini, David S. Guttman

*Corresponding author for this work

Research output: Contribution to journalArticle (Academic Journal)

38 Citations (Scopus)

Abstract

Background: Hazelnut (Corylus avellana) decline disease in Greece and Italy is caused by the convergent evolution of two distantly related lineages of Pseudomonas syringae pv. avellanae (Pav). We sequenced the genomes of three Pav isolates to determine if their convergent virulence phenotype had a common genetic basis due to either genetic exchange between lineages or parallel evolution.

Results: We found little evidence for horizontal transfer (recombination) of genes between Pav lineages, but two large genomic islands (GIs) have been recently acquired by one of the lineages. Evolutionary analyses of the genes encoding type III secreted effectors (T3SEs) that are translocated into host cells and are important for both suppressing and eliciting defense responses show that the two Pav lineages have dramatically different T3SE profiles, with only two shared putatively functional T3SEs. One Pav lineage has undergone unprecedented secretome remodeling, including the acquisition of eleven new T3SEs and the loss or pseudogenization of 15, including five of the six core T3SE families that are present in the other Pav lineage. Molecular dating indicates that divergence within both of the Pav lineages predates their observation in the field. This suggest that both Pav lineages have been cryptically infecting hazelnut trees or wild relatives for many years, and that the emergence of hazelnut decline in the 1970s may have been due to changes in agricultural practice.

Conclusions: These data show that divergent lineages of P. syringae can converge on identical disease etiology on the same host plant using different virulence mechanisms and that dramatic shifts in the arsenal of T3SEs can accompany disease emergence.

Original languageEnglish
Article number141
Number of pages11
JournalBMC Microbiology
Volume12
DOIs
Publication statusPublished - 16 Jul 2012

Keywords

  • Effector
  • Host specificity
  • Molecular dating
  • MULTIPLE SEQUENCE ALIGNMENT
  • DRAFT GENOME SEQUENCE
  • TOMATO DC3000
  • ERWINIA-AMYLOVORA
  • AVIRULENCE LOCUS
  • PATHOGEN
  • REVEALS
  • VIRULENCE
  • EVOLUTION
  • AVRE

Cite this

O'Brien, H. E., Thakur, S., Gong, Y., Fung, P., Zhang, J., Yuan, L., Wang, P. W., Yong, C., Scortichini, M., & Guttman, D. S. (2012). Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut. BMC Microbiology, 12, [141]. https://doi.org/10.1186/1471-2180-12-141