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Inferring selection in instances of long-range colonization: The Aleppo pine (Pinus halepensis) in the Mediterranean Basin

Research output: Contribution to journalArticle

  • Rose Ruiz Daniels
  • Richard S. Taylor
  • María Jesús Serra-Varela
  • Giovanni G. Vendramin
  • Santiago C. González-Martínez
  • Delphine Grivet
Original languageEnglish
Pages (from-to)3331-3345
Number of pages15
JournalMolecular Ecology
Issue number16
Early online date3 Aug 2018
DateAccepted/In press - 14 Jun 2018
DateE-pub ahead of print - 3 Aug 2018
DatePublished (current) - Aug 2018


Teasing apart the effects of natural selection and demography on current allele frequencies is challenging, due to both processes leaving a similar molecular footprint. In particular, when attempting to identify selection in species that have undergone a recent range expansion, the increase in genetic drift at the edges of range expansions (“allele surfing”) can be a confounding factor. To address this potential issue, we first assess the long-range colonization history of the Aleppo pine across the Mediterranean Basin, using molecular markers. We then look for single nucleotide polymorphisms (SNPs) involved in local adaptation using: (a) environmental correlation methods (bayenv2), focusing on bioclimatic variables important for the species’ adaptation (i.e., temperature, precipitation and water availability); and (b) FST-related methods (pcadapt). To assess the rate of false positives caused by the allele surfing effect, these results are compared with results from simulated SNP data that mimics the species’ past range expansions and the effect of genetic drift, but with no selection. We find that the Aleppo pine shows a previously unsuspected complex genetic structure across its range, as well as evidence of selection acting on SNPs involved with the response to bioclimatic variables such as drought. This study uses an original approach to disentangle the confounding effects of drift and selection in range margin populations. It also contributes to the increased evidence that plant populations are able to adapt to new environments despite the expected accumulation of deleterious mutations that takes place during long-range colonizations.

    Research areas

  • adaptation, allele surfing, environmental association, genetic differentiation, outliers



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