Abstract
Background
Despite advances in next generation sequencing technologies, the identification of variants of uncertain significance (VUS) can often hinder definitive diagnosis in patients with complex neurodevelopmental disorders.
Objective
The objective of this study was to identify and characterize the underlying cause of disease in a family with two children with severe developmental delay associated with generalized dystonia and episodic status dystonicus, chorea, epilepsy, and cataracts.
Methods
Candidate genes identified by autozygosity mapping and whole-exome sequencing were characterized using cellular and vertebrate model systems.
Results
Homozygous variants were found in three candidate genes: MED27, SLC6A7, and MPPE1. Although the patients had features of MED27-related disorder, the SLC6A7 and MPPE1 variants were functionally investigated. SLC6A7 variant in vitro overexpression caused decreased proline transport as a result of reduced cell-surface expression, and zebrafish knockdown of slc6a7 exhibited developmental delay and fragile motor neuron morphology that could not be rescued by L-proline transporter–G396S RNA. Lastly, patient fibroblasts displayed reduced cell-surface expression of glycophosphatidylinositol-anchored proteins linked to MPPE1 dysfunction.
Conclusions
We report a family harboring a homozygous MED27 variant with additional loss-of-function SLC6A7 and MPPE1 gene variants, which potentially contribute to a blended phenotype caused by multilocus pathogenic variants. © 2022 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society
Despite advances in next generation sequencing technologies, the identification of variants of uncertain significance (VUS) can often hinder definitive diagnosis in patients with complex neurodevelopmental disorders.
Objective
The objective of this study was to identify and characterize the underlying cause of disease in a family with two children with severe developmental delay associated with generalized dystonia and episodic status dystonicus, chorea, epilepsy, and cataracts.
Methods
Candidate genes identified by autozygosity mapping and whole-exome sequencing were characterized using cellular and vertebrate model systems.
Results
Homozygous variants were found in three candidate genes: MED27, SLC6A7, and MPPE1. Although the patients had features of MED27-related disorder, the SLC6A7 and MPPE1 variants were functionally investigated. SLC6A7 variant in vitro overexpression caused decreased proline transport as a result of reduced cell-surface expression, and zebrafish knockdown of slc6a7 exhibited developmental delay and fragile motor neuron morphology that could not be rescued by L-proline transporter–G396S RNA. Lastly, patient fibroblasts displayed reduced cell-surface expression of glycophosphatidylinositol-anchored proteins linked to MPPE1 dysfunction.
Conclusions
We report a family harboring a homozygous MED27 variant with additional loss-of-function SLC6A7 and MPPE1 gene variants, which potentially contribute to a blended phenotype caused by multilocus pathogenic variants. © 2022 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society
| Original language | English |
|---|---|
| Pages (from-to) | 2139-2146 |
| Number of pages | 8 |
| Journal | Movement Disorders |
| Volume | 37 |
| Issue number | 10 |
| Early online date | 25 Jul 2022 |
| DOIs | |
| Publication status | Published - 17 Oct 2022 |
Bibliographical note
Funding Information:This study was supported by an NIHR Professorship (M.A.K., K.M.R., R.S.), The Sir Jules Thorn Biomedical Award for Research (M.A.K., K.B.), Rosetrees Trust (M.A.K., K.M.R., K.B.), Medical Research Council (MRC) grant M013502, and National Health and Medical Research Council (NHMRC) grants APP1156673 (R.J.H.) and APP144429 (R.J.V.). E.R.M. acknowledges support and funding from the NIHR Cambridge Biomedical Research Centre. The University of Cambridge has received salary support (E.R.M.) from the National Health Service (NHS) in the East of England through the Clinical Academic Reserve. The views expressed are those of the authors and not necessarily those of the NHS or Department of Health. K.M.G. acknowledges funding from the Temple Street Foundation. We thank the family for their support in publishing this report. We also acknowledge William Gahl, Camilo Toro, Elizabeth Burke, and Jiayu Fu for their participation. We thank the UK10K project, largely funded by Wellcome, for their participation. We thank the Deciphering Developmental Disorders study, which presents independent research commissioned by the Health Innovation Challenge Fund (grant number HICF‐1009‐003), a parallel funding partnership between Wellcome and the Department of Health, and the Wellcome Sanger Institute (grant number WT098051). The views expressed in this publication are those of the author(s) and not necessarily those of Wellcome or the Department of Health. We thank NIHR BioResource volunteers for their participation and gratefully acknowledge NIHR BioResource centers, NHS Trusts, and staff for their contribution. We thank the National Institute for Health Research, NHS Blood and Transplant, and Health Data Research UK as part of the Digital Innovation Hub Programme. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR, or the Department of Health and Social Care. The study has UK Research Ethics Committee approval (10/H0305/83, granted by the Cambridge South REC, and GEN/284/12, granted by the Republic of Ireland REC). The research team acknowledges the support of the National Institute for Health Research, through the Comprehensive Clinical Research Network. This study makes use of DECIPHER ( https://www.deciphergenomics.org ), which is supported by Wellcome. M.A.K., K.M.R., and R.S. were supported by an NIHR Research professorship, Sir Jules Thorn Award for Biomedical Research, and the Rosetrees Trust. We also acknowledge BioRender.com , which was used to create Figures S2 and S5 .
Funding Information:
K.M.R.: Salary supported by grant from the NIHR, with research supported by grants from NIHR and Rosetrees trust. R.S. and S. Salian: Salary supported by grants from the NIHR, Great Ormond Hospital Children's Charity, and LifeArc. K.B., E.M., J.Z., and H.H.: Salary supported by grant from the NIHR, with research supported by grants from NIHR, Sir Jules Thorne, and Rosetrees trust. D.S. and H.B.: Supported by a University of Sydney Research Training Program Scholarship. K.G.: Supported by the Temple Street Foundation. A.P., M.A.S., Y.H., I.F., and M.T.: Research supported by a joint AMR/BPNA Clinical Research Training Fellowship (GN 2465) and an NIHR (GOSH BRC) Catalyst fellowship, as well as grants from Actelion, Rosetrees Trust, and NBIA Disorders Association. D.G., K.C., M.S., H.P., P.L., S.D.G., and E.‐J.K.: Salary supported by the National Institute for Health Research and UK Research and Innovation. T.B.H., L.C., R.G., and J.B.: Supported by funding from the German Research Foundation. E.R.M., R.H.S., F.L.R., and W.K.C.: Funding from the NIHR Cambridge Biomedical Research Centre. The University of Cambridge has received salary support (E.R.M.) from the NHS in the East of England through the Clinical Academic Reserve. R.J.V., S. Sudhakar, K.M., and M.E.R.: NHMRC grant APP144429 and National Institutes of Health grant RO1 4219209. P.M.C.: Received research funding from the CIHR (Canadian Institutes of Health Research) for research unrelated to the present study. R.J.H.: MRC grant M013502 and NHMRC grant APP1156673. M.A.K.: Funding supported from NIHR Research Professorship, Sir Jules Thorn Award for Biomedical Research, and the Rosetrees Trust. The authors declare no potential conflicts of interest.
Publisher Copyright:
© 2022 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.
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