Profile Comparer: a program for scoring and aligning profile hidden Markov models

Madera Martin

Research output: Contribution to journalArticle (Academic Journal)peer-review

70 Citations (Scopus)

Abstract

Profile Comparer (PRC) is a stand-alone program for scoring and aligning profile hidden Markov models (HMMs) of protein families. PRC can read models produced by SAM and HMMER, two popular profile HMM packages, as well as PSI-BLAST checkpoint files. This application note provides a brief description of the profile–profile algorithm used by PRC.
Translated title of the contributionProfile Comparer: a program for scoring and aligning profile hidden Markov models
Original languageEnglish
Article number2630-2631
JournalBioinformatics
Volume24(22)
Publication statusPublished - 2008

Bibliographical note

Other identifier: 2000966

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