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• Derivation, identification and validation of a computational model of a novel synthetic regulatory network in yeast

  Marucci, L., Santini, S., Di Bernardo, M. & di Bernardo, D., 2011, In: Journal of Mathematical Biology. 62, 5, p. 685-706

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  8 Citations (Scopus)

• Design and construction of a versatile synthetic network for bistable gene expression in mammalian systems

  Polynikis, A., Cuccato, G., Criscuolo, S., Hogan, S., Di Bernardo, M. & di Bernardo, D., Feb 2011, In: Journal of Computational Biology. 18 Issue 2, p. 195 - 203 8 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Gene Expression 100%
  • Small Hairpin RNA 100%
  • Reporter Gene 60%
  • Aptamer 40%
  • Mammalian Cell 20%
  3 Citations (Scopus)

• Evolution of eukaryotic genome architecture: Insights from the study of a rapidly evolving metazoan, Oikopleura dioica: Non-adaptive forces such as elevated mutation rates may influence the evolution of genome architecture

  Chavali, S., Morais, D. A. D. L., Gough, J. & Babu, M. M., Aug 2011, In: BioEssays. 33, 8, p. 592-601 10 p.

  Research output: Contribution to journal › Review article (Academic Journal) › peer-review

  • Oikopleura Dioica 100%
  • Animal 100%
  • Mutation Rate 100%
  • Genomics 100%
  • Exon 33%
  8 Citations (Scopus)

• Modeling RNA interference in mammalian cells

  Cuccato, G., Polynikis, A., Siciliano, V., Graziano, M., Di Bernardo, M. & di Bernardo, D., Jan 2011, In: BMC Systems Biology. 5

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Mammalian Cell 100%
  • RNAI 100%
  • Messenger RNA 100%
  • Small Interfering RNA 57%
  • RNA 42%
  50 Citations (Scopus)

• Peptide-nucleotide microdoplets as a step towards a membrance-free protocell model

  Koga, S., Williams, D. S., Perriman, A. W. & Mann, S., Sept 2011, In: Nature Chemistry. 3, p. 720 - 724 5 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  472 Citations (Scopus)

• Synthetic Biology - a bit of rebranding, or something new and inspiring?

  Woolfson, D. & Bromley, E., Feb 2011, In: Biochemist. 33, 1, p. 19 - 25 7 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Mathematical Principle 100%
  • Physical Science 100%
  • Broadband 100%
  • Biomimetics 100%
  • Synthetic Biology 100%
  8 Citations (Scopus)

• A comparative analysis of synthetic genetic oscillators

  Purcell, O., Savery, N., Grierson, C. & Di Bernardo, M., Nov 2010, In: Journal of the Royal Society Interface. 7, p. 1503 - 1524 21 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Dynamics 100%
  • Genetics 100%
  • Gene Regulatory Network 100%
  • Comparative Analysis 100%
  • Oscillator 100%
  162 Citations (Scopus)

• Building Blocks for Synthetic Biology: A Basis Set of Coiled Coils of Defined Oligomeric State.

  Fletcher, J. M., Thomson, A. R., Boyle, A. L., Zaccai, N. R., Bruning, M., Armstrong, C. T., Bromley, E. H. C., Brady, R. L. & Woolfson, D. N., Sept 2010, In: Journal of Peptide Science. 16, p. 206-206 1 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

• Global entrainment of transcriptional systems to periodic inputs

  Russo, G., Di Bernardo, M. & Sontag, E., Apr 2010, In: PLoS Computational Biology. 6, 4, 26 p., e1000739.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Dynamical System 100%
  • Limit Cycle 50%
  • Systems Theory 50%
  • Periodic Signal 50%
  • Generic Property 50%
  153 Citations (Scopus)

• More than just bare scaffolds: towards multi-component and decorated fibrous biomaterials

  Woolfson, D. & Mahmoud, Z., 2 Aug 2010

  Research output: Non-textual form › Web publication/site

  • Great Deal 100%
  • Life Application 100%
  • Real Life 100%
  • Biomedical Application 100%
  • Covalent 100%
  209 Citations (Scopus)

• The evolution of extracellular matrix

  Özbek, S., Balasubramanian, P., Chiquet-Ehrismann, R., Tucker, R. & Adams, J., Dec 2010, In: Molecular Biology of the Cell. 21 , 24, p. 4300 - 4305 6 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Posttranslational Modification 100%
  • Enzyme 100%
  • Multigene Family 100%
  • Integrin 100%
  • Expressed Sequence Tag 100%
  279 Citations (Scopus)

• A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches

  Cantone, I., Marucci, L., Iorio, F., Bansal, M., Belcastro, V., Ricci, M. A., Santini, S., Di Bernardo, M., di Bernardo, D. & Cosma, M. P., Apr 2009, In: Cell. 137, p. 172–181

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Small Molecule 100%
  • Regulatory Network 100%
  • Gene Regulatory Network 100%
  • Steady State 100%
  • Saccharomyces cerevisiae 100%
  329 Citations (Scopus)

• Comparing different ODE modelling approaches for gene regulatory networks

  Polynikis, A., Hogan, S. J. & Di Bernardo, M., Dec 2009, In: Journal of Theoretical Biology. 261, 4, p. 511 - 530 20 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Ordinary Differential Equation 100%
  • Modeling Approach 100%
  • Piecewise-Linear Approximation 66%
  • Genetic Regulatory Network 66%
  • Mathematical Modeling 66%
  135 Citations (Scopus)

• How to synchronize Biological Clocks

  Russo, G. & Di Bernardo, M., Feb 2009, In: Journal of Computational Biology. 16, p. 379 - 393 15 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  36 Citations (Scopus)

• How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch

  Marucci, L., Barton, D., Cantone, I., Ricci, M., Cosma, M., Santini, S., di Bernardo, D. & Di Bernardo, M., Dec 2009, RECOMB Systems Biology, Boston USA.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Contribution (Conference Proceeding)

  40 Citations (Scopus)

• How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch

  Marucci, L., Barton, D., Cantone, I., Ricci, M., Cosma, M., Santini, S., di Bernardo, D. & Di Bernardo, M., 7 Dec 2009, In: PLoS ONE. 4, 12, p. e8083

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Dynamics 100%
  • Genetics 100%
  • Biological Pathway 100%
  • Computational Modeling 50%
  • Reverse Engineering 50%
  40 Citations (Scopus)

• Immobilisation and encapsulation of functional protein-inorganic constructs

  Vickery, J. L., Thachepan, S., Patil, A. J. & Mann, S., 2009, In: Molecular bioSystems. 5, 7, p. 744-749 6 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Hydrogen Peroxide 100%
  • Biological Phenomena and Functions Concerning the Entire Organism 100%
  • Biological Product 100%
  • Conjugate 100%
  • Aqueous Solution 100%
  10 Citations (Scopus)

• Progress in biomimetic carbohydrate recognition

  Walker, D. B., Joshi, G. & Davis, A. P., Oct 2009, In: Cellular and Molecular Life Sciences. 66, 19, p. 3177-3191 15 p.

  Research output: Contribution to journal › Review article (Academic Journal) › peer-review

  • Receptor 100%
  • Lectin 100%
  • Biomimetics 100%
  • Protein Binding 50%
  • N Acetylglucosamine 50%
  108 Citations (Scopus)

• Rational design of peptide-based building blocks for nanoscience and synthetic biology

  Armstrong, C., Boyle, A., Bromley, E., Mahmoud, Z., Smith, L., Thomson, A. & Woolfson, D., Jul 2009, In: Faraday Discussions. 143, p. 305 - 317 13 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Coiled Coil 100%
  • De Novo Design 33%
  • Protein Structure 33%
  29 Citations (Scopus)

• Synthetic biology: enthusiasm and care

  Newson, A., Sept 2009, In: People and Science. p. 24 1 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

• The tumbleweed: towards a synthetic protein motor

  Bromley, E., Kuwada, N., Zuckermann, M., Donadini, R., Samii, L., Blab, G., Gemmen, G., Lopez, B., Curmi, P., Forde, N., Woolfson, D. & Linke, H., Jun 2009, In: HFSP Journal. 3 (3), p. 204 - 212

  Research output: Contribution to journal › Article (Academic Journal) › peer-review

  • Motor Protein 100%
  • Molecular Motor 100%
  • Salsola 100%
  • Nanostructure 100%
  • Nucleic Acid 100%
  34 Citations (Scopus)

• how to build a network of synthetic biological oscillators that synchronizes

  Russo, G. & Di Bernardo, M., 2008, International Conference on Systems Biology 2008.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Contribution (Conference Proceeding)

  • Networks 100%
  • Oscillator 100%

• Peptide and Protein Building Blocks for Synthetic Biology: From Programming Biomolecules to Self-organized Biomolecular Systems

  Bromley, E., Channon, K., Moutevelis, E. & Woolfson, D., Jan 2008, In: ACS Chemical Biology. 3, 1, p. 38 - 50 12 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  188 Citations (Scopus)

• Synthetic biology through biomolecular design and engineering

  Channon, K., Bromley, E. & Woolfson, D., 2008, In: Current Opinion in Structural Biology. 18, p. 1 - 8 8 p.

  Research output: Contribution to journal › Article (Academic Journal) › peer-review
  76 Citations (Scopus)